Data from: Worldwide phylogeny of three-spined sticklebacks

Fang B, Merilä J, Ribeiro F, Alexandre CM, Momigliano P

Date Published: June 14, 2018

DOI: https://doi.org/10.5061/dryad.2529hr1

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Title Worldwide phylogenetic tree of Gasterosteus aculeatus
Downloaded 3 times
Description The time-calibrated worldwide phylogenetic tree of Gasterosteus aculeatus.
Download World_3sp.tree (141.8 Kb)
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Title VCF file for all samples
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Description VCF file for all samples. It consists of 126 Gasterosteus aculeatus and 2 individuals of G. nipponicus, a sister species of G. aculeatus.
Download 128IDs_full_chrs_ref.vcf (219.0 Mb)
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Title Alignments_load_to_BEAST
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Description Sequence alignments used for phylogenomic analyses. The alignments include 8079 concatenated SNPs.
Download Alignments_load_to_BEAST.nex (1.036 Mb)
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Title Assembly parameters for ipyrad program
Description Assembly parameters for the ipyrad program in the study.
Download ipyrad_params.txt (3.008 Kb)
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Title Time verification tree built from 1000 concatenated RAD loci
Description Time verification tree built from1000 concatenated RAD loci. The tree was built for exclusively calculating divergence times given the tree topology estimated using the SNP data, and solely for the purpose of confirming divergence time estimates generated with the SNP dataset.
Download 1000_concat_loci_for_time_verification.tree (143.5 Kb)
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When using this data, please cite the original publication:

Fang B, Merilä J, Ribeiro F, Alexandre CM, Momigliano P (2018) Worldwide phylogeny of three-spined sticklebacks. Molecular Phylogenetics and Evolution 127: 613-625. https://doi.org/10.1016/j.ympev.2018.06.008

Additionally, please cite the Dryad data package:

Fang B, Merilä J, Ribeiro F, Alexandre CM, Momigliano P (2018) Data from: Worldwide phylogeny of three-spined sticklebacks. Dryad Digital Repository. https://doi.org/10.5061/dryad.2529hr1
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