FinalData_HDY-12-OR0223

When using this data, please cite the original article:

Burgos-Paz W, Souza CA, Megens HJ, Ramayo-Caldas Y, Melo M, Lemús-Flores C, Caal E, Soto HW, Martínez R, Álvarez LA, Aguirre L, Iñiguez V, Revidatti MA, Martínez-López OR, Llambi S, Esteve-Codina A, Rodríguez MC, Crooijmans RPMA, Paiva SR, Schook LB, Groenen MAM, Pérez-Enciso M (2012) Porcine colonization of the Americas: a 60k SNP story. Heredity 110(4): 321-330.doi:10.1038/hdy.2012.109

Additionally, please cite the Dryad data package:

Pérez-Enciso M, Burgos-Paz W, Souza CA, Megens HJ, Ramayo-Caldas Y, Melo M, Lemús-Flores C, Caal E, Soto HW, Martínez R, Álvarez LA, Aguirre L, Iñiguez V, Revidatti MA, Martínez-López OR, Llambi S, Esteve-Codina A, Rodríguez MC, Crooijmans RPMA, Paiva SR, Schook LB, Groenen MAM (2012) Data from: Porcine colonization of the Americas: a 60k SNP story. Dryad Digital Repository. doi:10.5061/dryad.t1r3d

Cite |

Download the data package citation in the following formats:

RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)

BibTex (compatible with BibDesk, LaTeX)

DOI	doi:10.5061/dryad.t1r3d/1
Pageviews	98
Downloaded	59 times
Keywords	Pig, Americas, Creole, Adaptation, SNP, arrays
Date Submitted	2012-11-16T17:00:43Z
Scientific Names	Sus scrofa
Spatial Coverage	Americas
Contained in Data Package	Data from: Porcine colonization of the Americas: a 60k SNP story.
Description Dataset corresponds to the article: "Porcine colonization of the Americas: A 60k SNP story." W. Burgos, C.A. Souza et al. For any correspondence, please address M. Perez-Enciso (miguel.perez@uab.es) Complete dataset contains 46259 SNP genotypes for 389 individuals. Info_sample.txt file contains information about location (Origin) and population (POPname) for each sample. MPE_378.* files contains genotypes for samples included for all analyses in the paper (PLINK format). MPE_389.* files also contains samples with high missing values that were used only in principal component analysis (PLINK format). The SNP_LD_pruned.dat file is a list of SNPs included after LD pruning. ADMIXTURE and PCA analyses were carried out using only those SNPs.