Data from: Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis

 

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Title Supplemental Dataset 1. Classification of TAIR9 other RNAs
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Title Supplemental Dataset 2. Classification of the TUs identifed by ESTs
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Title Supplemental Dataset 3. Classification of the TUs previously reported by Matsui.A et.al 2008
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Title Supplemental Dataset 4. Classification of the TUs previously reported by Okamoto.M et.al 2010
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Title Supplemental Dataset 5. Tiling array datasets we used for analysis
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Title Supplemental Dataset 6. Classification of the TUs identifed by RepTAS
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Download Supplemental Dataset 6. Classification of...AS.xls (3.400 Mb)
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Title Supplemental Dataset 7. RCTUs identifed by RepTAS
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Title Supplemental Dataset 8. Design of ATH LincRNA v1 Array
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Title Supplemental Dataset 9. LincRNAs identified by both RepTAS and RNA-seq
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Title Supplemental Dataset 10. Summary of assambled transcripts by RNA-seq
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Title Supplemental Dataset 11. Classification of the TUs identified by RNAseq
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Title Supplemental Dataset 12. Verfication of organ-preferencially expressed lincRNA by qRT-PCR
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Title Supplemental Dataset 13. Comparison of lincRNAs identifed by mutiple platforms
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Title Supplemental Dataset 14. Predicted introns of lincRNAs
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Title Supplemental Dataset 15. Stresses-responsive lincRNAs
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Download Supplemental Dataset 15 Stresses-responsi...As.xls (2.650 Mb)
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Title Supplemental Dataset 16. LincRNAs associated with smRNAs
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Download Supplemental Dataset 16.LincRNAs associat...As.xls (76.28 Kb)
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Title Supplemental Dataset 17. LincRNAs regulated by SERRATE and CBPs
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Download Supplemental Dataset 17. lincRNAs regulat...Ps.xls (176.6 Kb)
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Title Supplemental Dataset 18. Verfication of SE and CBPs regulated lincRNAs by qRT-PCR
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Download Supplemental Dataset 18. Verfication of S...CR.xls (35.32 Kb)
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Title Supplemental Dataset 19. Summary of expression evidence of lincRNA
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Download Supplemental Dataset 19 Summary of expres...NA.xls (311.2 Kb)
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When using this data, please cite the original publication:

Liu J, Jung C, Xu J, Wang H, Deng S, Bernad L, Arenas-Huertero C, Chua N (2012) Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. The Plant Cell 24(11): 4333-4345. http://dx.doi.org/10.1105/tpc.112.102855

Additionally, please cite the Dryad data package:

Liu J, Jung C, Xu J, Wang H, Deng S, Bernad L, Arenas-Huertero C, Chua N (2012) Data from: Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.n40hc
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