Data from: Lepidostroma vilgalysii, a new basidiolichen from the New World

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Title Lepidostroma_RAxML_analyses
Downloaded 80 times
Description Input and output files for backbone-constrained topological and bootstrap searches performed with RAxML.
Download Lepidostroma_RAxML_analyses.zip (108.8Kb)  View File Details
Title sequence_renamer
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Description A Perl script written primarily to take fasta files downloaded from GenBank and transform the complex sequence identifiers to a standardized format as follows: Genus_species_GenBankAccNum_GenInfoId
Download sequence_renamer.pl (1.262Kb)  View File Details
Title Lepidostroma_LSU
Downloaded 61 times
Description Full nuclear ribosomal LSU alignment for the data matrix that was analyzed phylogenetically, including exclusion sets, the backbone constraint tree, and the best RAxML tree resulting from the ML analyses.
Download Lepidostroma_LSU.nex (267.1Kb)  View File Details

When using this data, please cite the original article:

Hodkinson BP, Uehling JK, Smith ME (2012) Lepidostroma vilgalysii, a new basidiolichen from the New World. Mycological Progress 11(3): 827-833.doi:10.1007/s11557-011-0800-z

Additionally, please cite the Dryad data package:

Hodkinson BP, Uehling JK, Smith ME (2012) Data from: Lepidostroma vilgalysii, a new basidiolichen from the New World. Dryad Digital Repository. doi:10.5061/dryad.j1g5dh23
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DOI doi:10.5061/dryad.j1g5dh23
Pageviews 703
Keywords Trans-Mexican Volcanic Belt, lichen-forming fungi, phylogenetic constraint
Date Submitted 2012-01-09T16:01:07Z
Scientific Names Lepidostromataceae, Basidiomycota, Lepidostroma vilgalysii, Lepidostroma vilgalysii Hodkinson
Spatial Coverage Mexico
Abstract
The lichenized basidiomycete Lepidostroma vilgalysii is described from Mexico based on morphological analyses. The species is only the second representative of the family Lepidostromataceae documented from the New World, and is one of the few described lichens with an inverted morphology, with the algae in a layer at the base of the thallus. Molecular sequence data from the nuclear ribosomal LSU locus are used to confirm the placement of the holotype in Lepidostroma and to evaluate the molecular distinctiveness of the species from all other described species in the family and genus.

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